# Do you need a scrub-jay permit to clear a lot in Palm Bay?

> How Palm Bay's citywide scrub-jay permit works, what it means for clearing a lot in a mapped polygon, and how lots outside the city differ. Check your lot.

URL: https://flatwoodlandclearingpalmbay.com/guide/scrub-jay-permit/

Palm Bay holds one federal permit for the whole city. What that covers, where the old scrub-jay polygons sit, what the nesting season changes, and why a lot over the town line is a different matter.

Last Updated: October 31, 2026 · Written by Flatwood Land Clearing Palm Bay

Usually no separate one. Palm Bay holds a citywide federal incidental take permit, issued in 2007, that covers ordinary urban development inside city limits, so a lot owner works under the city’s permit rather than applying to the U.S. Fish and Wildlife Service alone. What the plan does impose is a ban on clearing in nesting season where active nests are on or near the lot, and an environmental fee collected with the building permit.

[Flatwood Land Clearing Palm Bay](https://flatwoodlandclearingpalmbay.com/) clears [lots](https://flatwoodlandclearingpalmbay.com/lot-clearing/) across Palm Bay, and on a lot inside a mapped scrub-jay polygon the date the work can start is part of the scope. This guide explains where the polygons are, what the city’s plan says and why a parcel outside city limits is handled differently.

**In short**

- Palm Bay applied in 2006 for a 30-year citywide federal permit with a habitat conservation plan for the Florida scrub-jay and the eastern indigo snake; it was issued in 2007.
- The plan prohibits clearing during scrub-jay nesting season where active nests are on or near the property, and collects an environmental fee with building permits.
- Brevard County’s scrub-jay layer shows eight historical polygons touching Palm Bay, covering about 5,839 acres.
- Nesting-season dates, the fee and whether a lot is covered are confirmed with the city for the parcel.
- Outside Palm Bay there is no citywide permit; occupied habitat is handled with the U.S. Fish and Wildlife Service for that property.

## Why scrub-jays matter on south Brevard lots

The Florida scrub-jay is a federally listed bird found only in Florida, and it lives in scrub: low oaks, sand pine and [saw palmetto](https://flatwoodlandclearingpalmbay.com/palmetto-clearing/) on dry, sandy ridges. Most of Palm Bay is wet flatwoods, with about 90 percent of its mapped soil poorly or very poorly drained, but the city also has scattered scrub ridges on Pomello and Paola sands, the drier, sloping soils that carry scrub oaks and sand pine. Citizen-science records inside the city include sand pine, myrtle oak and sand live oak, all scrub plants.

Those ridges are also prime building ground: dry, sandy and above the summer water table that sits about a foot down in the city’s flatwoods soils from June to November. That overlap between where people want to build and where scrub-jays live is the reason the city’s permit exists.

## How the citywide permit works

In 2006 the City of Palm Bay applied to the U.S. Fish and Wildlife Service for a 30-year citywide incidental take permit, with a habitat conservation plan covering the Florida scrub-jay and the eastern indigo snake, for urban development inside city limits. The Federal Register notice describes the plan as covering up to 20 scrub-jay families. Local public radio reported in 2013 that the permit had been issued in 2007.

An incidental take permit allows lawful activity, such as building homes, to go ahead even though it may harm a listed species, provided the plan’s minimization and mitigation measures are followed. Palm Bay’s plan has three that a lot owner meets:

- **Nesting-season clearing limit.** Land clearing is prohibited during scrub-jay nesting season if active nests are on or near the property to be cleared.
- **Scrub kept in landscaping.** The plan calls for retaining scrub vegetation in landscaping where it can be.
- **Environmental fee.** Mitigation is paid through environmental fees collected with building permits and donated to the Scrub-jay Conservation Fund. The city projected about $10.7 million in fees over the life of the plan.

The plan works for the owner because the city carries the federal permit. Without it, each owner of occupied habitat would face the federal process alone. The exact nesting-season window, the current fee and which lots the program covers are set by the city and confirmed for the parcel before clearing is scheduled.

## Where the scrub-jay polygons are

Brevard County’s GIS publishes scrub-jay occupancy polygons from surveys in 1993 and again in 2000 to 2002. The surveys are old, and the family counts show a steep decline, but the polygons are still the map the agencies start from.

| Place | Polygons | Polygon area | Families, 1993 | Families, 2000 to 2002 |
| --- | --- | --- | --- | --- |
| Palm Bay | 8 | about 5,839 acres | 87 | 21 |
| Grant-Valkaria | 8 | about 7,972 acres | 108 | 53 |
| Malabar | 4 | about 2,370 acres | 37 | 22 |
| Melbourne | 15 | about 2,386 acres | 31 | 23 |
| Micco | 2 | about 400 acres | 7 | 0 |
| West Melbourne | 2 | about 20 acres | 0 | 0 |

Polygon area is the whole area of each polygon touching the place, so it overstates how much of any one town is scrub-jay habitat. Being inside a polygon does not prove birds are on a lot today. Being outside one does not prove they are absent. It is a flag that tells you to ask before clearing.

## Lots outside Palm Bay

The citywide permit stops at the city line. [Malabar](https://flatwoodlandclearingpalmbay.com/service-areas/malabar/) and [Grant-Valkaria](https://flatwoodlandclearingpalmbay.com/service-areas/grant-valkaria/) both hold more historical scrub-jay polygon area than their size would suggest, and [Melbourne](https://flatwoodlandclearingpalmbay.com/service-areas/melbourne/) has fifteen polygons. A lot in occupied habitat in those places has no city permit to work under, so clearing it is a matter for the U.S. Fish and Wildlife Service for that property, confirmed per address.

Recent federal notices for Brevard show what that individual route looks like on larger projects. A 2023 commercial project that converted about 3.4 acres of occupied habitat on an 11.87-acre parcel mitigated by buying credits for 6.8 acres from a conservation bank. A 2026 airport taxiway project converting about 1.75 acres of occupied habitat contributed $100,380 to the Florida Scrub-jay Conservation Fund. Those are commercial projects, not house lots, but they show why a citywide plan matters to owners inside Palm Bay.

Brevard County’s small-scale land clearing permit for unincorporated land also says plainly that it does not cover protected species. The [Brevard permit guide](https://flatwoodlandclearingpalmbay.com/guide/palm-bay-land-clearing-permits/) covers what that permit does allow.

## What changes in the clearing itself

On a lot the city confirms as covered, three practical things change.

**Timing.** Clearing waits for the window the city allows if nests are active on or near the lot. Owners in other Florida counties with scrub-jay programs ask the same question online: whether the lot “always stays” a scrub-jay lot, and whether a private survey can opt it out. Those programs have their own rules, and in Palm Bay the answer comes from the city’s program. The [best time to clear land](https://flatwoodlandclearingpalmbay.com/guide/best-time-to-clear-land-in-florida/) guide puts the nesting season next to the wet season and burn bans.

**What stays.** The plan’s call to keep scrub vegetation in landscaping fits the city’s tree code, which already credits kept trees toward the four trees a new house lot needs before the certificate of occupancy. [Selective clearing](https://flatwoodlandclearingpalmbay.com/selective-clearing/) can keep scrub oaks and sand pine on the edges of the lot while the pad and driveway are [cleared and grubbed](https://flatwoodlandclearingpalmbay.com/clearing-and-grubbing/).

**Paperwork order.** The clearing permit for a Palm Bay house lot already waits for the building permit, and the environmental fee is collected with the building permit, one of the parts of a price set out in the [lot clearing cost guide](https://flatwoodlandclearingpalmbay.com/guide/lot-clearing-cost-palm-bay/). So on a covered lot, the scrub-jay step falls naturally between the building permit application and the clearing.

## Why clearing first is the worst option

Palm Bay’s tree code says that when a clearing violation may have affected protected species or habitat, the city notifies the regulatory agencies and further penalties can follow. That sits on top of the code’s own penalties: a stop work order, a new application at double the fee and a restoration plan. A lot cleared in nesting season can move from a city fee to a federal matter, which costs far more time and money than waiting a few months.

The other protected animal on these same dry ridges is the gopher tortoise, which follows its own state rule. The [gopher tortoise guide](https://flatwoodlandclearingpalmbay.com/guide/gopher-tortoise-survey-before-clearing/) covers the 25-foot rule, and [how to clear a lot to build a house](https://flatwoodlandclearingpalmbay.com/guide/clearing-a-lot-to-build-a-house/) puts both checks in the full permit order.

Lot in a scrub-jay polygon?

Send the address or parcel number. The scope checks the county's scrub-jay layer and sets the clearing date around what the city confirms for the parcel.

## Three more questions

### How do I find out if my Palm Bay lot is inside a scrub-jay polygon?

Brevard County publishes a scrub-jay layer on its GIS map service, showing the occupancy polygons from the 1993 and 2000 to 2002 surveys. Checking the parcel against that layer shows whether it falls inside one. Whether the city treats the lot as covered by its habitat conservation plan, and what that means for timing and the fee, is confirmed with the city.

### Does Palm Bay's scrub-jay permit cover a lot in Malabar or Grant-Valkaria?

No. The citywide permit covers urban development inside Palm Bay's city limits. Malabar and Grant-Valkaria both have scrub-jay polygons of their own, and clearing occupied habitat there is a matter for the U.S. Fish and Wildlife Service for that property, confirmed per address before any work.

### Can a lot owner clear scrub before the nesting season to avoid the limits?

That is the wrong way round. The plan's restriction applies where active nests are on or near the property, and clearing that harms a protected species is referred by the city to the state and federal agencies. The safe order is to confirm the parcel's status with the city first, then schedule the clearing inside whatever window it allows.

## More guides on clearing a lot

- [LearnHow to clear a Palm Bay lot to build a house](https://flatwoodlandclearingpalmbay.com/guide/clearing-a-lot-to-build-a-house/)
- [LearnLand clearing permits in Palm Bay and Brevard County](https://flatwoodlandclearingpalmbay.com/guide/palm-bay-land-clearing-permits/)
- [LearnGopher tortoise surveys before clearing](https://flatwoodlandclearingpalmbay.com/guide/gopher-tortoise-survey-before-clearing/)
- [LearnThe best time of year to clear land in Florida](https://flatwoodlandclearingpalmbay.com/guide/best-time-to-clear-land-in-florida/)
- [Cost GuideWhat it costs to clear a lot in Palm Bay](https://flatwoodlandclearingpalmbay.com/guide/lot-clearing-cost-palm-bay/)

## Contact Flatwood Land Clearing Palm Bay

- Phone: [(321) 513-1820](tel:+13215131820)
- Email: [office@flatwoodlandclearingpalmbay.com](mailto:office@flatwoodlandclearingpalmbay.com)
- Address: 3555 SE Bayside Lakes Blvd, Palm Bay, FL 32909
- Hours: Monday to Friday 8am-6pm, Saturday and Sunday 9am-2pm (America/New_York). Outside these hours, emergency calls only.
- Request an estimate: https://flatwoodlandclearingpalmbay.com/contact/#estimate